PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939137.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 247aa    MW: 25672.7 Da    PI: 9.0537
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939137.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005698120123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F +   L  H  +H
  XP_010939137.1  98 YKCSVCGKAFGSYQALGGHKASH 120
                     9*********9999998888777 PP

2zf-C2H213.20.00026154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F++   L  H r+H
  XP_010939137.1 154 HECSVCHKTFPTGQALGGHKRRH 176
                     78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.84598125IPR007087Zinc finger, C2H2
SMARTSM003550.01298120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-498120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-1398122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-998120No hitNo description
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-9149176No hitNo description
PfamPF139121.3E-13153178IPR007087Zinc finger, C2H2
SMARTSM003550.043154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALEALDVTP ARSPALVSQS TVSEATAEEV APPPQLEAWA KRKRSKRHRF DDHRPTEEEY  60
LALCLMMLAR GEGGRAGASH RLPTPSPPPS VVEARPEYKC SVCGKAFGSY QALGGHKASH  120
RRPPSSSSGG GGGVGEEVVS SGSASSSGGG GRVHECSVCH KTFPTGQALG GHKRRHYEGG  180
AAAGATGRSG VTTSEAATSG PRGFDLNLPP LPDQFGRQAT ASRCLAAAEE EVQSPLALKK  240
PRYLIPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939137.11e-177zinc finger protein 1
TrEMBLA0A2H3X2261e-101A0A2H3X226_PHODC; zinc finger protein ZAT10-like
STRINGXP_008777133.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-47salt tolerance zinc finger