PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937829.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8787.55 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937829.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA129.11.3e-401380470
            S1FA  4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    + +ea kGlnPGl+vllv+ggl+l flvgny+ly+yaqk+lP +kkkPvskkk+kre+lkqGv++PGe
  XP_010937829.1 13 VMEEAtKGLNPGLVVLLVIGGLVLFFLVGNYALYMYAQKTLPMKKKKPVSKKKMKRERLKQGVSAPGE 80
                    456666*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.2E-391680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGEQFSGSAE NLVMEEATKG LNPGLVVLLV IGGLVLFFLV GNYALYMYAQ KTLPMKKKKP  60
VSKKKMKRER LKQGVSAPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937829.12e-50PREDICTED: DNA-binding protein S1FA-like
RefseqXP_010937830.12e-50PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX62e-24S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0B0N2252e-23A0A0B0N225_G
STRINGLOC_Os04g33440.25e-22(Oryza sativa Japonica Group)
STRINGBGIOSGA015143-PA5e-22(Oryza sativa Indica Group)
STRINGORGLA04G0086600.15e-22(Oryza glaberrima)
STRINGOB04G18770.17e-22(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563