PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 311aa    MW: 34153.2 Da    PI: 9.453
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937590.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.71.1e-30441622117
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg....k 89 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++ ++ ++    +  + + s++    +     
  XP_010937590.1  44 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQMPPGNFIqfpQ--ALQMSHE--ATPrlqaP 134
                     689*************************************************************999998886422..3333322..22223345 PP

             TCP  90 aaksaakskksqksaasalnlakesrak 117
                     +++s+  +k +q++a   + + k s  +
  XP_010937590.1 135 SCPSDVLQKTKQREAMRESGIEKGSATE 162
                     6666666666666666556555554433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.11546104IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2846163IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MIKDSQQRQL SAKQGSATND KARTSMGLWS GLKDPRIVRV SRAFGGKDRH SKVSTIRGLR  60
DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQMP PGNFIQFPQA  120
LQMSHEATPR LQAPSCPSDV LQKTKQREAM RESGIEKGSA TEGDEMEHDA SIHCAQVSAN  180
DLLSRTHHSS LDLLSNAMQY GCYYQWESPN AYNVSHLGIH SSLVEGQPTS NPSSLSAGPA  240
SQLVFCPPGA MPSAFDFDPK QFSHFQVVSS ASENTPLNPT RTSLHSGNSA VRAFQSNLAS  300
KHHHAGNQNK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1951105155Putative transcription factor PCF6
5zkt_B6e-1951105155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937590.10.0transcription factor TCP17 isoform X2
TrEMBLA0A2H3YXJ80.0A0A2H3YXJ8_PHODC; transcription factor TCP5-like
STRINGXP_008805146.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-45plastid transcription factor 1