PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 359aa    MW: 39289.8 Da    PI: 7.7446
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937582.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.41.1e-2944126283
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++ ++ ++   +++ + s++
  XP_010937582.1  44 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQMPPGNFIqFPQALQMSHE 126
                     689*************************************************************8888877753333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2846205IPR005333Transcription factor, TCP
PROSITE profilePS5136929.11546104IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIKDSQQRQL SAKQGSATND KARTSMGLWS GLKDPRIVRV SRAFGGKDRH SKVSTIRGLR  60
DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQMP PGNFIQFPQA  120
LQMSHEATPR LQAPSCPSGE DNLEYPTENG GRPLALFSSK ANQDVLGDEV VVEDLATLSK  180
SNLFNSDVLQ KTKQREAMRE SGIEKGSATE GDEMEHDASI HCAQVSANDL LSRTHHSSLD  240
LLSNAMQYGC YYQWESPNAY NVSHLGIHSS LVEGQPTSNP SSLSAGPASQ LVFCPPGAMP  300
SAFDFDPKQF SHFQVVSSAS ENTPLNPTRT SLHSGNSAVR AFQSNLASKH HHAGNQNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1951105155Putative transcription factor PCF6
5zkt_B7e-1951105155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937582.10.0transcription factor TCP5 isoform X1
TrEMBLA0A2H3YXJ80.0A0A2H3YXJ8_PHODC; transcription factor TCP5-like
STRINGXP_008805146.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-45plastid transcription factor 1