PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937242.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 287aa    MW: 31727.9 Da    PI: 8.2711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937242.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015222244223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+ +Fs+ s L  H  + H
  XP_010937242.1 222 QCTQCPARFSTVSALIEHAEKsH 244
                     7*****************98888 PP

2zf-C2H216.62.2e-05259281223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L+ H  + H
  XP_010937242.1 259 VCPKCSRGFRDPVLLVEHVERdH 281
                     7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.7E-13651No hitNo description
Gene3DG3DSA:4.10.1110.107.6E-111052IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.7571059IPR000058Zinc finger, AN1-type
SMARTSM001541.8E-51352IPR000058Zinc finger, AN1-type
PfamPF014283.9E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.8E-1090146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.6E-893143No hitNo description
PROSITE profilePS510398.21398146IPR000058Zinc finger, AN1-type
SMARTSM001540.058101142IPR000058Zinc finger, AN1-type
PfamPF014281.5E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.58221249IPR007087Zinc finger, C2H2
SMARTSM003550.13221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM0035511258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538258286IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG KHCNVDDCRQ IDFLPFTCDR CNKVFCLEHR SYTKHLCPNA NQQDVTVLVC  60
PLCAKGVRLV PNEDPNITWE SHVNCDCDPS NYQKATKKKR CPVPGCKELL TFSNTLRCRD  120
CTKEHCLKHR FGPDHKCPGP KKQDSGFRFV GLLNRSQKRE SPSNNCSNGS SWWGSSLLTA  180
ASNLRASAEA GMQKLSDATT QALQRAKDGT APSSSGGALV EQCTQCPARF STVSALIEHA  240
EKSHQRNTQP VHSRVMIDVC PKCSRGFRDP VLLVEHVERD HGGSSTA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937215.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937225.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937234.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_010937242.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-147SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2H3ZML80.0A0A2H3ZML8_PHODC; LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_008784866.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]