PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936714.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Dof
Protein Properties Length: 283aa    MW: 31200.9 Da    PI: 7.2874
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936714.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.93e-4043102261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s
  XP_010936714.1  43 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRS 102
                     7899******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3041101IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3344101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.35747101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDSSDWLKSI VHEESGMVSS SPSGELISCS RPPMMERRLR PQHDQALKCP RCDSTHTKFC  60
YYNNYSLSQP RYFCKTCRRY WTKGGSLRNV PVGGGCRKNK RSVAKKPSEQ PPQHVSSFHD  120
ATDLHLSFSG VQFPHLGSLA DTPRNLNFIE CKYNPSVESS AGGLDLMMDT RFGAMLGSSR  180
GHSFSDLGLG ETSHGFALGG FPGVNQLGFS VDGNHEALVE ACQRLALPYE AHENPSAVEV  240
KPDNRILSLE WQDQYCADGG RESMGYSGLW NGMINCHGPS TTI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936713.10.0dof zinc finger protein DOF5.6 isoform X1
RefseqXP_010936714.10.0dof zinc finger protein DOF5.6 isoform X2
SwissprotQ9FM032e-35DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLA0A2H3XE760.0A0A2H3XE76_PHODC; dof zinc finger protein DOF5.6-like isoform X1
TrEMBLA0A2H3XEI00.0A0A2H3XEI0_PHODC; dof zinc finger protein DOF5.6-like isoform X2
STRINGXP_008782476.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-37Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]