PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936464.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 323aa    MW: 36271.6 Da    PI: 9.4666
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936464.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.41.1e-2946157389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 
                     g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ ++ ++    +++ +s +    ++       
  XP_010936464.1  46 GGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYDLQDKLGVNQPSKVVDWLLNAAQHEIDKLPPLQMPPGNFIqfPQSMAVSHKL---APpqapsfd 137
                     78*************************************************************88888777532222222211...112223444 PP

             TCP  89 ...................k 89 
                                        +
  XP_010936464.1 138 ptrdgtefihddrtfqlasS 157
                     55555555555555555321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-2847181IPR005333Transcription factor, TCP
PROSITE profilePS5136929.38647105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MIRDSREEEL FTKQGGGTNV DGFPVSSRLW SGLKNPRIVR VSRTFGGKDR HSKVRTIRGL  60
RDRRVRLSVP TAIQLYDLQD KLGVNQPSKV VDWLLNAAQH EIDKLPPLQM PPGNFIQFPQ  120
SMAVSHKLAP PQAPSFDPTR DGTEFIHDDR TFQLASSSSV ANGDMLDNNT VQNAMNMVQK  180
STFWNSDVLM KNKEKEAMKE TSIEKGSMIK GNDTGSGLQN NDMSYPSYHH WDPSNAHISY  240
LGSHFSQADG FHNYQPASMF ASYMNPPTEF NAKQYKHLHM DNSASQLLPS NSLRTSLQSG  300
GPSLELLQPN LAFKHRHPQG HQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1852106155Putative transcription factor PCF6
5zkt_B3e-1852106155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936464.10.0transcription factor TCP13
TrEMBLA0A2H3ZA710.0A0A2H3ZA71_PHODC; transcription factor TCP13-like
STRINGXP_008810756.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-44plastid transcription factor 1