PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936336.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 498aa    MW: 54756.8 Da    PI: 7.7019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936336.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0584102321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C++Cgk+F+++ +L  H+r
  XP_010936336.1  84 CKKCGKVFPSWKSLFGHMR 102
                     ******************8 PP

2zf-C2H216.52.3e-05407429123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cgk+Fs+   L  H r+H
  XP_010936336.1 407 HECPICGKVFSSGQALGGHKRSH 429
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.4931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099936IPR007087Zinc finger, C2H2
PfamPF139122.5E-6932IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-8931No hitNo description
PROSITE patternPS0002801031IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-877104No hitNo description
SMARTSM003550.0282104IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.76482109IPR007087Zinc finger, C2H2
PfamPF139121.6E-784106IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-9332355No hitNo description
PfamPF139124.0E-11332357IPR007087Zinc finger, C2H2
SMARTSM003550.31333355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847333360IPR007087Zinc finger, C2H2
PROSITE patternPS000280335355IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-9402429No hitNo description
Gene3DG3DSA:3.30.160.608.6E-5405429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005407429IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-12407429IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72407429IPR007087Zinc finger, C2H2
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MERDQQLKHC CKVCRKSFPC GRSLGGHMRS HLALNSLTEA EERLQSSRSS IGVGAGYGLR  60
ENPKKTWRLS DSGGDRSPRQ AKLCKKCGKV FPSWKSLFGH MRCHQEKSHH NLEEGEEQDK  120
ELEEQEGSWS AGGQSDNETL IPRRRRRSRQ VASIPGSLSP VLESKKEQEN VALSLMMLSS  180
DTGFWSGISP VAESSDKNSV VLEDLGSEGD EIGKAKKRSE FIASRNGDKG DGLKKMESDV  240
SNDDDNGFVK DDEFKKPKAY ASDTDEFEYS YEASRKGSLE KKDLNCGLAE LGRKTRSDQW  300
HSVVGKYSKL GSRSEIGVSN GEFSKVSLKR GRYECATCNK FFPSYQALGG HRASHKRIKG  360
CFASRTEGSE NSLETDASIE PAQFEESIHK NVGIDASSEA SKKVKSHECP ICGKVFSSGQ  420
ALGGHKRSHL VASSDGGGLT NQAIVIQQQP PGLLDLLDLN LPAPTDEGSN NTDGNLKLKS  480
WWVGRNHEHE SLSDLISN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936336.10.0zinc finger protein ZAT1
TrEMBLA0A3Q0ICF10.0A0A3Q0ICF1_PHODC; zinc finger protein ZAT1-like
STRINGXP_008805104.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-42C2H2-like zinc finger protein