PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936186.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 662aa    MW: 72210 Da    PI: 7.0408
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936186.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-16313372155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010936186.1 313 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 372
                     78*******************988886678446*************************98 PP

2AP245.61.7e-14417466355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010936186.1 417 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 466
                     9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.88E-22313380No hitNo description
PfamPF008479.1E-13313372IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16313382IPR016177DNA-binding domain
PROSITE profilePS5103219.203314380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16314381IPR001471AP2/ERF domain
SMARTSM003802.7E-29314386IPR001471AP2/ERF domain
PRINTSPR003675.1E-6315326IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17415475IPR016177DNA-binding domain
CDDcd000181.36E-24415476No hitNo description
Gene3DG3DSA:3.30.730.105.3E-18416474IPR001471AP2/ERF domain
SMARTSM003801.2E-33416480IPR001471AP2/ERF domain
PROSITE profilePS5103219.177416474IPR001471AP2/ERF domain
PfamPF008472.9E-9417466IPR001471AP2/ERF domain
PRINTSPR003675.1E-6456476IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKSMNNNNNN NNNGWLGFSL SPQMNMEVSS EPHHPTNNQS HHHQAQPTHA AVSSAVPCSF  60
FLSPPQLSSS GLCYGVEGEN GGLYSQLSVM PLKSDGSLCI MEALSRSQQQ GMVPSPSPKL  120
EDFLGGGPNL GSHHHYGNNE RGAMALSLDS IYYHQNSQPE GNRSHPLDLL QVQQHQQQHP  180
YFQPLQEGLC SGLTGHEIYQ GPLEEEPMAD DGIPSLKNWV AGHYGACSNG LGEEGGIGSS  240
SVGTMGYGDL QSLSLSMSPG SQSSCVTAPQ QISPAAPTEC MALDTPKKRG TGKGGPKQPV  300
HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA  360
RAYDLAALKY WGPSTHINFP LENYQEELEE MKNMSRQEYV AHLRRKSSGF SRGASMYRGV  420
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDITRYDV  480
EKIMASPTLL SGELARRTKA IEAGNDASSI QNSSRELDLT EENNSSASDW KMVLYQSPQQ  540
TPQSSESLNH KSVTGAGDHR SSATLSAALH GIVGVETVGS VKGVEDSGKI GNNHISNPSS  600
LVTSLSSSRE GSPDRNGLSM LYTKPSPNFI NPTPMSSWIP STQIRTTISM AQMPVFAAWH  660
DV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936186.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-166ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLM0SJ830.0M0SJ83_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P30690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein