PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 236aa    MW: 26041.2 Da    PI: 6.4937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935865.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.6e-3971071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf++eq +++fa++hk+FGasnv+kll +lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_010935865.1   7 PCGACKFLRRKCVRGCIFAPYFCHEQgAAHFAAIHKVFGASNVSKLLMHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFTLQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+lk++
  XP_010935865.1 102 ASLKAQ 107
                     *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0736108IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCIFAPYFCH EQGAAHFAAI HKVFGASNVS KLLMHLPVTD  60
RCEAAVTISY EAQARLQDPI YGCVAHIFTL QQQVVNLQAQ LASLKAQAAA QSCASASTST  120
SREEKLNNKF PPYQQDGQGF FQGGDLRTSQ PLVSEPVMNP ETMLGFDNGL LNPNSFQSSQ  180
EYYPRSYMTE DPISFSSDDN YSCAVASPDM QPNTRRPAYH DMEDLQSVTF AYLHHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3431017104LOB family transfactor Ramosa2.1
5ly0_B7e-3431017104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935865.11e-178LOB domain-containing protein 29-like
SwissprotQ5UG137e-68LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A2H3XRK81e-146A0A2H3XRK8_PHODC; LOB domain-containing protein CRL1-like
STRINGXP_008787549.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-53lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Coudert Y,PĂ©rin C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]