PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935624.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Dof
Protein Properties Length: 262aa    MW: 28254.5 Da    PI: 5.9403
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935624.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.22.3e-3545101359
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                      + l+cprC+s+ntkfCyynnys sqPr+fC+aCrr+Wt+GG+lrnvPvGggr++++
  XP_010935624.1  45 AAPLRCPRCESANTKFCYYNNYSKSQPRHFCRACRRHWTEGGTLRNVPVGGGRKNKR 101
                     56789*********************************************9976554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2336101IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3147100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.18648102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MATMDLSSKL VAGDSLDWSQ DGGLEMRKPG SEGKALEQQQ QWQKAAPLRC PRCESANTKF  60
CYYNNYSKSQ PRHFCRACRR HWTEGGTLRN VPVGGGRKNK RVKTAHDASP SMDNNGLAHG  120
QQRKQMAPFD DGDGQGGIFP GILRPVLLHP PPPLPLDYGM DGGGGFAGPV LSSIPPFLPE  180
AATGEADFLS SSANATNPLS SISSSSCSSP YDYTRLDPIV GEDGFAAWQA PTSHLSCWDD  240
ITDLVNAEDS FLSTYPTMKG EV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935624.10.0dof zinc finger protein 4
TrEMBLA0A2H3YRA21e-142A0A2H3YRA2_PHODC; dof zinc finger protein 1-like
STRINGXP_008802484.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.27e-30Dof family protein