PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 581aa    MW: 61931.3 Da    PI: 8.9245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935372.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_010935372.1 74 FICEVCNKGFQREQNLQLHRRGH 96
                    89*******************88 PP

2zf-C2H212.50.00044150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010935372.1 150 WKCDKCSKRYAVQSDWKAHSKTC 172
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-77396No hitNo description
Gene3DG3DSA:3.30.160.606.5E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997496IPR007087Zinc finger, C2H2
SMARTSM003550.00527496IPR015880Zinc finger, C2H2-like
PfamPF121712.8E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-7145170No hitNo description
SMARTSM00355140150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAAASSSAPF FGIREEEHHN QQQQQASSTP GSSAPAASQP PAPQKKKRNL PGNPNPDAEV  60
IALSPKTLLA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKNPKEQ RRRVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAQESARIPT GLSTIGSHLY GNSSMGLGLS QVNPQLSSLP  240
NQTHPSADLL RLGGSGGGTQ FDHLNPSSFR QPQPRHSSPF FLGGGSSQGF NDDPQSNHPL  300
LQGKTFHGLM QLPDLQANTN NASSSSTAAA TAANLFNLSF FSNGGSTSNM NNSNNTGNQN  360
TNLLIPDHFN NGNASTEPTT LFSGNLMNDH MGSGISSLYN PSMYNESSVP QMSATALLQK  420
AAQMGATTSG GGGGSLLRGF GSSFSSGSKT TGFQAAFSGG GGDGENSRSQ VENENHFQDL  480
MNSLANGSAG IFSGGHEQQT GFGGFNPGLC NMDEGKLHRN LSTGGIGGSD GLTRDFLGVN  540
SMVRSMGGGI STREQHLGID IGSLDSEMKS GSSSRSFGGN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34146210367Zinc finger protein JACKDAW
5b3h_F4e-34146210367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935369.10.0protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_010935371.10.0protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_010935372.10.0protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_029123473.10.0protein indeterminate-domain 5, chloroplastic isoform X1
RefseqXP_029123474.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ9ZUL31e-134IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2H3YVB10.0A0A2H3YVB1_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRINGXP_008804317.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-112indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]