PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935191.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 320aa    MW: 35233.3 Da    PI: 4.808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935191.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11155197754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  XP_010935191.1 155 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 197
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.35E-5141202No hitNo description
PROSITE profilePS5088815.085148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-12154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9155197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15155209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MELDEHGFLE ELLALRRDTW DTLPTGMSEF FSSEGSLDCF QEGQGLVPPS FSAFGGLAPP  60
AEPNFDCLSE VYCPFGAGFA PAAPEIQSLS VRPALEDAKV GLVHGDRHGV VGDGQAVCKV  120
EMGPSAEAPA VFGMGGCMER KKKKRAEGLP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  180
MDRTSILGDT IDYMKELLER IKRLQEEIEV GPDQPNLLGI FKELNPNEIL VRNSPKFDVE  240
RRDSDTRIEI CCTAKPGLLL STVNTLEALG LEIQQCVVSC FNDFGMQASC SEDVEQRAVI  300
SSDEIKQALF RNAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RKKKKR
2142162KKRAEGLPSKNLMAERRRRKR
3156163ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935191.10.0transcription factor bHLH93
SwissprotQ9LSL14e-85BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3YZF60.0A0A2H3YZF6_PHODC; transcription factor bHLH93-like
STRINGXP_008806159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-87beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]