PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 270aa    MW: 30487.9 Da    PI: 7.9182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934659.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-183282155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  XP_010934659.1 32 TKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 82
                    699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-313289No hitNo description
PfamPF008473.1E-133282IPR001471AP2/ERF domain
SMARTSM003805.7E-363396IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-193390IPR016177DNA-binding domain
PROSITE profilePS5103219.5853390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-283390IPR001471AP2/ERF domain
PRINTSPR003679.1E-83445IPR001471AP2/ERF domain
PRINTSPR003679.1E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MELQFQQQRH QQHRVPISKP TKFKGRTKSS STKFVGVRQR PSGRWVAEIK DTTQKIRMWL  60
GTFETAEEAA RAYDEAACLL RGSNTRTNFI THVSTDSPIA SRIRKLLDHK KLSKIGSQPQ  120
HTTSNSQSYC ASTPATSLST STSSSTITTE SSGSTSTAAL VHDKKQDIPI TNEVYRPCFS  180
NGAEELEWRS SPSDNNSWLF ESGFDRWFDG FELPDASSEL SEFDRMKVER QISASLYAMN  240
GVQEYLETVR DPSDSLWDLP SICHLSCRTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-133495668ATERF1
2gcc_A2e-133495668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934659.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLM0SSX65e-98M0SSX6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P28640_0011e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-43related to AP2 11