PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933907.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 347aa    MW: 36029.7 Da    PI: 7.0662
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933907.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.61.6e-3668157789
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 
                     r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++   ++ +  ++++s +       
  XP_010933907.1  68 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATnVGGTLKIPTQAPSTApvtstsT 157
                     9**********************************************************7777744321112222222111112221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2969148IPR005333Transcription factor, TCP
PROSITE profilePS5136927.49769123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSQKQEKEE DDDRRRTDLR MAGGGGGGGG GTAVPPPAAM PVHRLIIPKP EPIEMMSGFQ  60
ILRRPTGRTK DRHTKVEGRG RRIRMPAACA ARIFQLTREL GHKSDGETIR WLLQHAEPAI  120
IAATGTGTVP AIATNVGGTL KIPTQAPSTA PVTSTSTPAT DAAGEAGRKR RRKLQPSRAA  180
GAGAAAAAAA AYYPVQDPLL PGGGAISIST GLAPIGAAQG MVPMWAATAG GRLIPPGALW  240
MIPPPSAMAG PSSQPQLWTF PQGPQIINLA AARPIPAVAT PTAAEPPSST TAGGCSTASA  300
LSAGEDKAEL LLMGESGEQR HRQEQNQEQK ENEEVEEEEL SESSPED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173GRKRRRKL
2166174GRKRRRKLQ
3167171RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933907.10.0transcription factor PCF2
SwissprotA2YXQ13e-75PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH63e-75PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2H3X0J70.0A0A2H3X0J7_PHODC; transcription factor PCF2-like
STRINGXP_008776516.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-47TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]