PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Dof
Protein Properties Length: 323aa    MW: 34018.8 Da    PI: 9.016
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933842.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.22.1e-393999262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  XP_010933842.1 39 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 99
                    7899******************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-293697IPR003851Zinc finger, Dof-type
PfamPF027011.6E-334197IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1994397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MHKVHEIGLV KPMEELVSST TSTTTTRPHL MERRTRPQKE QALNCPRCNS TNTKFCYYNN  60
YSLTQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSTT SSTAGPTSTA TTTTSTITAA  120
ASTVSTSRKL PPELSPTPMS LSTSSQNPKF HEGQDLNLAF PHHSLPEFND FPNLESSSNN  180
NNNNSSNSGS NPCTAVGALS AMELLRSGMG ARGLGPFMPM PMPDYPAGFG VGLQEFRPPT  240
LGFPLDGIGG AGGGNSGGGG GGGGGGYGGL HGVQENASGR LLFPFEDLKP VPSSTAAEFG  300
QNRGQVGDPP GFWNGMMGGG ASW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933841.10.0dof zinc finger protein 1
SwissprotQ9SXG87e-64DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA0A2H3XY511e-160A0A2H3XY51_PHODC; dof zinc finger protein 2-like
STRINGXP_008790518.11e-160(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-50Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]