PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933133.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 182aa    MW: 20490.7 Da    PI: 7.6292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933133.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000293355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  XP_010933133.1 33 YECMFCKRGFTTAQALGGHMNIH 55
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-63160No hitNo description
PfamPF139121.1E-53257IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0743360IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-43359IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGGHNKGTK VSSSKASSPE PTTDDARTMR PYYECMFCKR GFTTAQALGG HMNIHRKDRA  60
RMQHDQMVYS VSGKAEENLE GYGYNIPNSY HHRAYSQVSE SLMKNNSFCF PASFSGGGDS  120
RVARDDGMGS RRQRELSLFG QELQLGLGMQ FNGSSGVYEK EKRNYVDEEK ELDLELRLGH  180
QP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933133.11e-135zinc finger protein 5-like
TrEMBLA0A2H3Y6W47e-95A0A2H3Y6W4_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008794311.11e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-13C2H2 family protein