PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 427aa    MW: 47596.6 Da    PI: 8.9609
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932506.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-066789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_010932506.1 67 YVCEICNQGFQRDQNLQMHRRRH 89
                    9*********************9 PP

2zf-C2H216.32.7e-05144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k +  +s++k H++t+
  XP_010932506.1 144 WVCAKCSKAYAVQSDYKAHLKTC 166
                     58*******************98 PP

3zf-C2H2110.0013174192523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  XP_010932506.1 174 DCGRVFSRVESFIEHQDTC 192
                     9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-56490No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355210108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4135165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035593144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MIGSPPPAPP QPLGINTSSN SSIPPQPFPS LHSVNTTKKK RRPAGTPDPD AEVISLSPRT  60
LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREA AEVRKRVFVC PEPSCLHHDP  120
CHALGDLVGI KKHFRRKHSN HRQWVCAKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCNGGRARTE LGTLQPASLS SDTNFSKPGW PGLQMPNSAA FFLHSDQIPS  240
PSADHRRTNN IELQLLPPSN TKSTSLPSST LSPTSQEAQA TKLQLSIGLG SDRAPPEEPG  300
LATMRLKEEA REQLRLAMAE KALADEARQQ AKRQIELAEQ EFTNAKRIRH QAQAELNRAH  360
ALRDHAVKQI NSTLLQITCY ACKQQFQAKP MMASDENSLV ASYMSSVVTE GEEENDDQNQ  420
QQKNSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17142214570Zinc finger protein JACKDAW
5b3h_F7e-17142214570Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKKRR
23742KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932506.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-139IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2H3XV520.0A0A2H3XV52_PHODC; protein indeterminate-domain 16
STRINGXP_008789229.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-133indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]