PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 539aa    MW: 58742.7 Da    PI: 5.4067
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932035.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17162211155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010932035.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                     78*******************......55************************997 PP

2AP246.21.1e-14254304155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ + +g
  XP_010932035.1 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDKAAIRCNG 304
                     89********.7******5553..2.26**********************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-16162220IPR016177DNA-binding domain
PfamPF008476.4E-9162211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-17163219IPR001471AP2/ERF domain
CDDcd000186.11E-11163218No hitNo description
SMARTSM003801.4E-32163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.767163219IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18254314IPR016177DNA-binding domain
CDDcd000182.75E-25254314No hitNo description
PfamPF008472.2E-10254304IPR001471AP2/ERF domain
PROSITE profilePS5103216.476255312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17255312IPR001471AP2/ERF domain
SMARTSM003801.3E-32255318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MWDLNNSPDP IRDAASPSDE EEWEVEEEPA ESSSPKNAVT DDKGKGPESA STADNDDSSS  60
SALLVEASNE ADGDGCRRVF GFSVGGDGRC SGESELAIVT HQFFPVEEVG GRESDGAEGP  120
LPRAHWVGVK FCPSSKTAAA GKAMDASRPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADTNFNL EDYEEDMKQM NSLTKEEFVH  240
VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQFLGKKYV YLGLFDTEEE AARAYDKAAI  300
RCNGKDAVTN FDPSIYAGEL SAASGHSDHD LDLSLGNSSS KRSSLEPMAD DSPGGVDQCV  360
PVAFEQNWRV SIPSTRPKQP EEAAGINFRL DNAYMQSPGP PSEMYKYPAA FQIIPDPAGF  420
PDSNSVGGGL YLAMRGEEQQ LQQQHRQSNW GNRSSIWPSS HAVASPHLFA TTAAASSGFS  480
PQTAKSPPAW QAGERVPLPD KTQLRDNILS PPGDPFESPF SAAKMADSVV CAFSHRLPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932035.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
TrEMBLF6H4H71e-141F6H4H7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00220.t011e-141(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-106AP2 family protein