PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931909.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 385aa    MW: 44452.4 Da    PI: 8.4285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931909.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000533558123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    y C++Cg + s ks+ ++Hi + H
  XP_010931909.1 35 YYCEYCGICRSKKSLIRSHILSdH 58
                    89******************9988 PP

2zf-C2H2218.6e-0782104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg sF+ + +Lk+H+++H
  XP_010931909.1  82 HTCQECGASFRKPAYLKQHMQSH 104
                     79*******************99 PP

3zf-C2H218.17.4e-06110134123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp  dC+ s++rk++L+rH+  H
  XP_010931909.1 110 FSCPldDCHLSYRRKDHLTRHLLQH 134
                     89*******************9887 PP

4zf-C2H213.30.00025139164123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp  +C+++F  k n+ rH +  H
  XP_010931909.1 139 FTCPveNCDRRFAIKGNMSRHVKEfH 164
                     89********************9988 PP

5zf-C2H218.94.2e-06176200123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+   Cgk F+  s L++H  tH
  XP_010931909.1 176 YICQepGCGKAFKYASKLRKHEDTH 200
                     889999***************9998 PP

6zf-C2H216.23.1e-05268291323
                     ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                     C    C ++Fs++snL+ Hi+  H
  XP_010931909.1 268 CCfkGCQYTFSNRSNLNLHIKAvH 291
                     66689***************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355263558IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.06682109IPR007087Zinc finger, C2H2
SuperFamilySSF576674.68E-1082134No hitNo description
Gene3DG3DSA:3.30.160.606.3E-882103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.4E-482104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-11104136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.328110139IPR007087Zinc finger, C2H2
SMARTSM003550.01110134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-6137165No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6137165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.575139169IPR007087Zinc finger, C2H2
SMARTSM003550.017139164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-10171201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-6172201No hitNo description
SMARTSM003550.0021176200IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427176201IPR007087Zinc finger, C2H2
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
SMARTSM003557.8208233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SMARTSM003558.6236257IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.67E-8247308No hitNo description
Gene3DG3DSA:3.30.160.602.2E-6247288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99266296IPR007087Zinc finger, C2H2
SMARTSM003558.9E-4266291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268291IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4290319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.871297323IPR007087Zinc finger, C2H2
SMARTSM003550.61297323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MASVEPTSLG GGTANEVADG LSEKEKPIFR DIRRYYCEYC GICRSKKSLI RSHILSDHED  60
ELKDAQTDQG NEETEVNNQL RHTCQECGAS FRKPAYLKQH MQSHSLERPF SCPLDDCHLS  120
YRRKDHLTRH LLQHQGKLFT CPVENCDRRF AIKGNMSRHV KEFHEDGCPC EGEKQYICQE  180
PGCGKAFKYA SKLRKHEDTH AKLDFVEVIC CEPGCMKTFT NTECLKAHTQ SCHQYVQCEV  240
CGTQQLKKNL KRHQRMHEGG GVTERIKCCF KGCQYTFSNR SNLNLHIKAV HQELRPFACR  300
ISGCGKRFPY KHVRDNHEKS GVHVYVQGDF LETDEHLRSR PRGGRKRKYL SVETLQRKRV  360
VPPGQVSSLD DGTSYMRWLL SDDQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-198629319190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-198629319190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931909.10.0transcription factor IIIA
SwissprotQ84MZ41e-135TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2H3Y5C40.0A0A2H3Y5C4_PHODC; transcription factor IIIA-like
STRINGXP_008793643.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-137transcription factor IIIA