PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931586.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 347aa    MW: 38783.5 Da    PI: 8.3239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931586.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013167191123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     +kC    C k+F++  +L  H rtH
  XP_010931586.1 167 FKCMhgGCEKTFKNAQTLSMHYRTH 191
                     789999******************9 PP

2zf-C2H214.20.00013215233220
                     EETTTTEEESSHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                     +Cp Cg+ F   ++L+rH 
  XP_010931586.1 215 RCPVCGRIFVGLYELRRHF 233
                     8*****************6 PP

3zf-C2H211.20.0012244266123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F    +L+ H +++
  XP_010931586.1 244 HNCKKCGKKFYIEVDLRDHEKLC 266
                     67*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.57E-7163192No hitNo description
Gene3DG3DSA:3.30.160.603.4E-8163191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.928167196IPR007087Zinc finger, C2H2
SMARTSM003558.8E-4167191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-7213264No hitNo description
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
PROSITE profilePS501578.58214242IPR007087Zinc finger, C2H2
SMARTSM003550.077214237IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621244265IPR007087Zinc finger, C2H2
SMARTSM0035548244264IPR015880Zinc finger, C2H2-like
SMARTSM00355260270291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDYSSSLPLP GSPFPLNPQD FPNFPPFPLS EELKFLCPDL ALPPDFYNVG SPSAMDPQVS  60
SDFSFPVSKD AVFPFDPAVS VEDLEFIDAQ LEFRVHDNVV QGDIFPQDPN VGSLDSGESN  120
LTPQNPVQNA EFKDLRKSQK IYGLREGKKA LKVATVSVDM IRNRRPFKCM HGGCEKTFKN  180
AQTLSMHYRT HDKNMSDVLA TSALKAGQNK KIPCRCPVCG RIFVGLYELR RHFGRKHSEG  240
EKMHNCKKCG KKFYIEVDLR DHEKLCGEMV GCKCGLKFAF KCNLQAHKRT HPECVGKPSN  300
SPENRNVEKD QSSSSPSLGL MGMKLEDIWA LGCRARLDAL VPAVVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931586.10.0zinc finger protein ENHYDROUS
TrEMBLA0A1U8B6S11e-102A0A1U8B6S1_NELNU; zinc finger protein 567-like
STRINGXP_010271936.11e-103(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5085222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.17e-12C2H2-like zinc finger protein