PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 254aa    MW: 26688.9 Da    PI: 6.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929122.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010929122.1 100 FSCNYCRRKFYSSQALGGHQNAH 122
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-697128No hitNo description
PROSITE profilePS5015711.385100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MESLGATIHS EATSSLSNKE AIMVKAEEEE GGAGGGGEQP ECNEVLLDLS MSNKDSDDGT  60
SSSAQPVLEL DLIGSLGATA GAAAIEAPPP ESRESEPRVF SCNYCRRKFY SSQALGGHQN  120
AHKRERSLTK RGPRPGHGLG CFPPSMAALP LHGAFGGRPL GIQVHSMVHK PYFGAAPSMA  180
GGVLNGRHGW CRPAAPTIDQ RPAVGRLRME NFWAAPSARF DEAGVAAGGY RWGGGNQLSA  240
GKEEVQKLDL SLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929121.10.0zinc finger protein 1
RefseqXP_010929122.10.0zinc finger protein 1
TrEMBLA0A2H3YZU11e-151A0A2H3YZU1_PHODC; zinc finger protein 1-like
STRINGXP_008806291.11e-151(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-29zinc-finger protein 1