PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 153aa    MW: 16917 Da    PI: 8.0368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928990.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156686323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+ksFs++  L  H ++H
  XP_010928990.1 66 CNICNKSFSSHQALGGHTSSH 86
                    **************9999988 PP

2zf-C2H2130.000397119123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+ +F++   L  H r+H
  XP_010928990.1  97 HQCNICSLTFPTGQALGGHKRKH 119
                     79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-862119No hitNo description
Gene3DG3DSA:3.30.160.603.6E-46286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.56486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2846491IPR007087Zinc finger, C2H2
PfamPF139122.6E-86687IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM003550.08697119IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-1297121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MNVNSTSMDV DKIEGSNQNI HKSTIGYNRT VGISSMSQSA IHEPTKKMND SEILTDLAPN  60
RKQYWCNICN KSFSSHQALG GHTSSHKVGL PIKVSEHQCN ICSLTFPTGQ ALGGHKRKHW  120
SGPDSSVAPS LETTEKPIHP HLDIYLNEPR QLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707791.11e-110zinc finger protein ZAT9-like
TrEMBLA0A2H3X8R81e-38A0A2H3X8R8_PHODC; zinc finger protein ZAT6-like
STRINGXP_008780105.12e-39(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3753623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-18C2H2 family protein