PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928534.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 355aa    MW: 39679.2 Da    PI: 9.4105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928534.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044113136123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C  Cg+ F  +  L+ H r  H
  XP_010928534.1 113 YPCRVCGRNFFAHAKLVDHFRQiH 136
                     99*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-5111139No hitNo description
PROSITE profilePS5015711.926113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061676.32E-12142265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIGFLRQFRG PVTTFHLSAG LLPKTLVSAA AAASKPSVAV FWDLDNKPPK SIPPYDAAVR  60
LKLAASSLGS LRFCVAYANH HAFRHVPAPV RAARAAGRAR DHREASQPSP EPYPCRVCGR  120
NFFAHAKLVD HFRQIHEREH AKRLRRLDST RGGRRVRLAA QLALKMEKYE KAARELLVPR  180
VGYGLADELR RAGVVVRTVE DRPEAADRAL REHIVDTMDR GKIGCLVVVS DDSGFVGVLR  240
EARMRCLKTV VVGDEGDGAL KRCADANFSW KDVISGKARK EAESAVGKWN DRELLKRLEW  300
TYEPDLEQIE DDVFEGQSED GDDEDGSFGL VGKRWSKDSK PWWKLDSDSC DSIVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RAARAAGRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928534.10.0uncharacterized protein LOC105050282
TrEMBLA0A2H3Y5P70.0A0A2H3Y5P7_PHODC; uncharacterized protein LOC103710014
STRINGXP_008793801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-94C2H2 family protein