PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928501.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 330aa    MW: 36808.4 Da    PI: 7.0689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928501.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05169188120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_010928501.1 169 FSCPVCLKTFNRYNNMQMHM 188
                     89*****************9 PP

2zf-C2H214.79.2e-05253275123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010928501.1 253 FMCRKCGKAFAVRGDWRTHEKNC 275
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.31169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66169196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-6169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-6234273No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6249273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549253273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808253273IPR007087Zinc finger, C2H2
SMARTSM00355150279302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADPYSNFFK GYYNYYPYSS SPAPPPIGIP TYNFYNTHSC SNPNPTLPTP PPSPPLREAL  60
PLLSLSPTKP PEEEDTSCSE AKNKTMSIDD EGDDGDNEAV TVALRIGLPN PGAADLISTV  120
SSTPEDSGDH KEAEGGDDVA PLCYPIGRLN KGQYWIPTPS QILIGPTQFS CPVCLKTFNR  180
YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNIDHPR SKPLKDFRTL  240
QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF  300
GHGHAAYGID CFEEDDEPSS EIEQDGDPSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928501.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2H3Y9Z70.0A0A2H3Y9Z7_PHODC; zinc finger protein WIP2-like
STRINGXP_008795700.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]