PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927559.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 1334aa    MW: 147420 Da    PI: 8.0734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927559.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003612181241122
                      EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                      ++C    C++sFs+k +L+ H r 
  XP_010927559.1 1218 HTCDieGCSMSFSTKQDLTLHKRD 1241
                      789999***************985 PP

2zf-C2H212.60.0004212431265323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H ++H
  XP_010927559.1 1243 CPvkGCGKKFFSHKYLVQHRKVH 1265
                      9999*****************99 PP

3zf-C2H212.50.0004513011327123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg++F+  s++ rH r+  H
  XP_010927559.1 1301 YVCQepGCGQTFRFVSDFSRHKRKtgH 1327
                      89********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.5E-173071IPR003349JmjN domain
PROSITE profilePS5118313.7163172IPR003349JmjN domain
PfamPF023752.1E-133265IPR003349JmjN domain
SMARTSM005589.4E-47200369IPR003347JmjC domain
PROSITE profilePS5118433.173200369IPR003347JmjC domain
SuperFamilySSF511974.12E-25218370No hitNo description
PfamPF023731.2E-36233352IPR003347JmjC domain
SMARTSM00355912181240IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96712411270IPR007087Zinc finger, C2H2
SMARTSM003550.4912411265IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-512431269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012431265IPR007087Zinc finger, C2H2
SuperFamilySSF576679.53E-612431278No hitNo description
Gene3DG3DSA:3.30.160.603.1E-812701295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40612711300IPR007087Zinc finger, C2H2
SMARTSM003550.002912711295IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012731295IPR007087Zinc finger, C2H2
SuperFamilySSF576679.84E-1012811324No hitNo description
Gene3DG3DSA:3.30.160.604.2E-1012961324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.61613011332IPR007087Zinc finger, C2H2
SMARTSM003550.1713011327IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013031327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1334 aa     Download sequence    Send to blast
MAAAASASSA EPPPPPPPAE VPQWLKSLPL APEYHPTLAE FQDPIAYILK IEKEASSFGI  60
CKIVPPLPAP PKKTTVANLN RSFAAREPNP KKPPTFTTRQ QQIGFCPRRP RPVQKPVWQS  120
GEHYTLQQFE TKAKQFERAY LKKVTAARKG GLLSPLEIET LFWKACADKP FNVEYANDMP  180
GSGFAPLGAA RRWREEEATN VGETAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYVAMMF  240
SWFAWHVEDH ELHSLNYLHM GASKTWYGVP RDAALAFEEV VRVHGYCGEV NRLVTFALLG  300
EKTTVMTPEV LIGAGIPCCR LVQNAGDFVV TFPGAYHTGF SHGFNCGEAA NIATPGWLRV  360
AKEAAIRRAS INYPPMVSHF QLLYALALSL CTRMPRGIRS EPRSSRLKDK MKGEGEEMVK  420
NIFVQSVIQN NHLLSVLLDK GSSCVVLPQN GPDSPLCSNS LVRSQVKVKP RLSLGLCSHQ  480
EALEASRLLP SNDMLGWNAG IRDLSGFGTL KGNSVSVCQG KIISSATCKF GTADFYTSSL  540
DSQNGEGEKE GTLQGDGLLD QGLLSCVTCG ILSFACVAVI QPREAAAKCL MSTDYGFLGD  600
HIDGSGELRD VNQDTNRRTG QIERHIEDMV DDYWIPCGRY SAQVSEQGVE VLSDDTGQRG  660
ISALDLLASA YGGTSDTEDE EILHEKSACT DENDIKDSPL SCKPNEHPNV ANELQNFCSS  720
KDPNKEIDLS LVGSDSQNGT AQNSHYTGGS DDSSKLTNVS AGEKCQLKLE FHGSNQPENA  780
KSAEEDSLDD NREITTSNSS IKSMEEPRDF SYREADGACH AIGSDDNHQS NMKIGNPDFG  840
SENLSIQPDV CSESSEPTKG TATLSRNADI KTTDSALTVL QKCDKDSSRM HVFCLEHAVE  900
VEKQLQPIGG VHIMLLCHPD YPKIEAEAKL LAEELGIDYT WKDVHFKEAT KEDQERIRAA  960
LEDEEAIPMN SDWAVKLGIN LYYSANLSKS PLYSKQMPYN AVIYKAFGCN SPGNSSSKPK  1020
ASSGRKPGRE KKIVVAGRWC GKVWMSNQVH PYLAHRNEDH EHDHVEKLYS QSTGRKSKVE  1080
ADLEDAPSKS IPSTSNATAA RKAGKKRKKP LRKASNKKPR RTQIDNSEDV EGVAETPSSS  1140
CGRVLRSSRS KHTEIANRKK LNMKDEAEGG PSTRLRKRPS KATEEVKTKS GGRKQIMKRK  1200
AKKAQATNLV TKDEDGEHTC DIEGCSMSFS TKQDLTLHKR DICPVKGCGK KFFSHKYLVQ  1260
HRKVHMDDRP LECPWKGCSM TFKWAWARTE HIRVHTGDRP YVCQEPGCGQ TFRFVSDFSR  1320
HKRKTGHSIR KGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-74234587413Transcription factor jumonji (Jmj) family protein
6ip4_A1e-74234587413Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111041108KKRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927559.10.0lysine-specific demethylase REF6
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2H3YDT20.0A0A2H3YDT2_PHODC; LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
STRINGXP_008797141.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]