PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925456.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 509aa    MW: 55317.5 Da    PI: 9.1441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925456.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010925456.1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                    89*******************88 PP

2zf-C2H212.40.00047151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_010925456.1 151 WKCDKCSKKYAVQSDWKAHAKIC 173
                     58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.26E-77497No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355110116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.26E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MMKGLIIQQH QLAEENMSNL TSASGEASVS SNQQSSFASP NPAPVKKKRN LPGNPDPDAE  60
VIALSPRTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VKKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHA KICGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAM VGNPLANNHP LLFSQPTSSH EPPPLPHTAL  240
QAQFPHLMRT TAANTNIIGS HGLQELSLKR EQHLGMRADI PPWLAGQGPV SLNQLDLPSS  300
FYSTRLEQQY SHENQAPHPP PLPPPYQGPS TAASSHMSAT ALLQKAAQMG ATMSRPPHHG  360
QMASLTTNAT VANTASTGFG LGLTSHQEMA GGGGGGFGHG SAPPLLQDMM MNSLPSPPGF  420
GGSFEESFGV MLEAKRQENN ITMESIARSH GMNEGGSAGA GGGTDGLTRD FLGLRAFSHK  480
DILNMAGFDP CMSSSSYEQP QQNKKPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36147219372Zinc finger protein JACKDAW
5b3h_F7e-36147219372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925456.10.0protein indeterminate-domain 7
TrEMBLA0A2H3Y4910.0A0A2H3Y491_PHODC; protein indeterminate-domain 7-like
STRINGXP_008793218.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2