PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925416.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 286aa    MW: 31599.9 Da    PI: 10.572
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925416.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.61.9e-19160193134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_010925416.1 160 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 193
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.09E-13154194No hitNo description
SMARTSM004014.0E-20154205IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466158190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15158193IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.77E-12159187No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003203.7E-17160193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNRFSPIPLA EGGRGRDRRH LPPFAVASDT SSFSCSILFN TSQEQGANDG DHHLLQQKPD  60
DHLLISKSSD RLISFPTNNN NNTVEEPSHD RYVSQEDLHG PTKWMSSKMR FMRKMMNSGH  120
VIMSKRRTNM QILQDQGQSN QDGSTSNSSS NSPSGIIRVC SDCNTTKTPL WRSGPRGPKS  180
LCNACGIRQR KARRAMAAAA ASGGLIPSGA RGKMPKEKKS DVDRTIPFKK RCKNVHAIAT  240
TTQKKLCFDD VMISLSKSSA VHRVFPQDER DAALLLMALS WGIICS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925416.10.0putative GATA transcription factor 22
TrEMBLA0A2H3Y4Y41e-145A0A2H3Y4Y4_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
STRINGXP_008793253.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-27cytokinin-responsive gata factor 1