PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 448aa    MW: 50819.2 Da    PI: 5.9305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925216.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05160183123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg++++++ +Lk+H r  H
  XP_010925216.1 160 YVCSVCGRRCRTRPDLKKHFRQlH 183
                     9******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.1E-680150IPR029060PIN domain-like
SuperFamilySSF576674.6E-5159186No hitNo description
Gene3DG3DSA:3.30.160.608.6E-4159180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4160183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759160188IPR007087Zinc finger, C2H2
PROSITE patternPS000280162183IPR007087Zinc finger, C2H2
CDDcd061671.69E-12174314No hitNo description
Gene3DG3DSA:3.40.50.10101.1E-6245300IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNPIVAIDIP PFKPPPFVQL RHPGSVLPFV SLPPPLRLRL RPIRAPIPVL AAAPQPPFRA  60
ASSAEVDMIR GRDGVWSART EQRVVVLWDL DNKPPRGPPY EAAVALRRVG ELFGHVVDIS  120
AYANRHAFAH LPQWVLAQRR ERRRLDALER KGLAVPDEPY VCSVCGRRCR TRPDLKKHFR  180
QLHERERQKK ISRMRSLKGK KRQRYRERFI AGNRKYEEAA RELVTPKTGY GLASELRRAG  240
VLVRTVEDKP QAADSALKRQ MQHSLARGID WLLLVSDDSD FSEMVRRARD SDLRTVVVGD  300
GRTVLGRHAD LWVPWARVEN GQVGEELLQS WQRKTGFSTI GNYDEDHEDD CGYKYDYEEE  360
EEEREKGFYS PASFSEEDGD SGGLDEVVDG FVVDNSGIGG VKISAFSEEE AWSGEILGED  420
FGDDSFRIME PSLPGEDLVW DSVEEEDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925216.10.0uncharacterized protein LOC105047798
RefseqXP_010925295.10.0uncharacterized protein LOC105047798
RefseqXP_010925443.10.0uncharacterized protein LOC105047798
RefseqXP_010925523.10.0uncharacterized protein LOC105047798
RefseqXP_010925661.10.0uncharacterized protein LOC105047798
RefseqXP_010925888.10.0uncharacterized protein LOC105047798
RefseqXP_019701761.10.0uncharacterized protein LOC105047798
RefseqXP_029118851.10.0uncharacterized protein LOC105047798
RefseqXP_029118853.10.0uncharacterized protein LOC105047798
RefseqXP_029118855.10.0uncharacterized protein LOC105047798
RefseqXP_029118856.10.0uncharacterized protein LOC105047798
RefseqXP_029118861.10.0uncharacterized protein LOC105047798
TrEMBLA0A2H3X0K70.0A0A2H3X0K7_PHODC; uncharacterized protein LOC103696621
STRINGXP_008776526.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-130C2H2-like zinc finger protein