PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 389aa    MW: 42089.2 Da    PI: 7.121
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924429.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-3559159289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WLl+ ak++i+el+++        + +s+s+     s+ s++++ ++
  XP_010924429.1  59 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLLKHAKASIDELAELprwrppttT-TSSSDP----SRPSNQHDLHE 148
                     79**************************************************************877665531.222111....22222222222 PP

             TCP  89 ..........k 89 
                               +
  XP_010924429.1 149 epvptepaadQ 159
                     12223222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3259158IPR005333Transcription factor, TCP
PROSITE profilePS5136933.47461119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEESSHHHRN HQQQLLLLHH HQQQQQQRRP LPHNSRMGGL RGAAGEVVEV SGGHIVRSTG  60
RKDRHSKVCT AKGLRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLLK HAKASIDELA  120
ELPRWRPPTT TTSSSDPSRP SNQHDLHEEP VPTEPAADQA AYSSATFLPP SLNSDSIADT  180
IKTFFPMATT TASSTYQNYP PDLVSRSSNQ AQDLRLSLQS FQDPMFHQNQ TPAASSQQNF  240
LSGNLVFGST SAGWPEQNQK VVAWNVAETG DGGSGGGGDG GYGSNMPPPQ AVPLHPALSL  300
SQLFSQRGTL QSSNSTSVRS WMDPIAAAAG HQIHPAGIHS SWPSVTATGF IFSDGGGFSG  360
FHIPAWIQGE EEHGGISSKP PSDSSASNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2066119154Putative transcription factor PCF6
5zkt_B1e-2066119154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924430.10.0transcription factor PCF5-like
RefseqXP_029121022.10.0transcription factor PCF5-like
SwissprotQ9MAH82e-83TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2H3ZR620.0A0A2H3ZR62_PHODC; transcription factor PCF5-like
STRINGXP_008793159.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.19e-63TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]