PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 161aa    MW: 18451.8 Da    PI: 8.1752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924131.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000347496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  Cgk F  + + ++H +++
  XP_010924131.1 74 FGCRRCGKAFAVRGDWRTHEKNC 96
                    56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56094IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-66094No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MQMHMWGHGS QYRKGSESLR GATKAMASPS MMRLPCYCCA EGCKNNIEHP RSRPLKDFRT  60
LQTHYKRKHG ARPFGCRRCG KAFAVRGDWR THEKNCGKLW FCICGSDFKH KRSLKDHVRS  120
FGGGHAPHIV ESMNVDEEEE EEEGEDVDEE GHGEINGDML R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924131.21e-120zinc finger protein WIP6
SwissprotQ8W0301e-76ZWIP4_ARATH; Zinc finger protein WIP4
SwissprotQ8W0315e-77ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2H3X9M67e-91A0A2H3X9M6_PHODC; zinc finger protein WIP6-like
STRINGXP_008780503.11e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-78C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]