PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 168aa    MW: 18431.1 Da    PI: 8.4019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922390.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_010922390.1 45 FECKTCNRQFPSFQALGGHRASH 67
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-843110No hitNo description
PfamPF139122.7E-134469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274572IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139123.2E-1087112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34988115IPR007087Zinc finger, C2H2
SMARTSM003550.588110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRFRFGGEE EVESMNMANV LMLLSRGGGG EESEHTAQAS PSRVFECKTC NRQFPSFQAL  60
GGHRASHKKP RLTAEGQLQG GLAKPRVHEC SICGLEFAIG QALGGHMRRH RAATEGFGHG  120
LAEKKPEGRR VLSLDLNLPP SENDIECRGK IGFGMEIVDK IRMVDCLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922390.11e-120zinc finger protein ZAT11
TrEMBLA0A2H3XSD76e-98A0A2H3XSD7_PHODC; zinc finger protein ZAT11
STRINGXP_008788081.11e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-40C2H2 family protein