PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 387aa    MW: 45542 Da    PI: 9.0304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922007.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000843860123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++Cg++ s ks+ ++Hi +H
  XP_010922007.1 38 YYCEYCGMCRSKKSLIRSHILSH 60
                    89*******************96 PP

2zf-C2H221.27.7e-0785107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg sF+ + +Lk+H+++H
  XP_010922007.1  85 HTCQECGASFRKPAHLKQHMQSH 107
                     79*******************99 PP

3zf-C2H218.17.4e-06113137123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp  dC+ s++rk++L+rH+  H
  XP_010922007.1 113 FSCPldDCHLSYRRKDHLTRHLLQH 137
                     89*******************9887 PP

4zf-C2H215.83.9e-05142167123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp  +C+++F  ksn+krH +  H
  XP_010922007.1 142 FTCPmeNCNRRFAIKSNMKRHVKQiH 167
                     89*******************99877 PP

5zf-C2H217.21.5e-05179203123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+   C k+F+  s L++H  tH
  XP_010922007.1 179 YICEeaGCRKTFNYASKLRKHEDTH 203
                     89*******************9998 PP

6zf-C2H2110.0014212236223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     +C+   C k+F++ + Lk Hir+ H
  XP_010922007.1 212 VCSesGCMKTFTNAECLKAHIRScH 236
                     57778999***************66 PP

7zf-C2H219.23.3e-06270294223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C ++Fs++snL++Hi+  H
  XP_010922007.1 270 KCSfkGCQYTFSNRSNLNQHIKAvH 294
                     688899***************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355173860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.37885112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-585104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.3E-485107IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.36E-1085137No hitNo description
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-11105138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.58113137IPR007087Zinc finger, C2H2
SMARTSM003550.01113137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115137IPR007087Zinc finger, C2H2
SuperFamilySSF576673.33E-9123184No hitNo description
Gene3DG3DSA:3.30.160.601.9E-8139164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.988142172IPR007087Zinc finger, C2H2
SMARTSM003550.0014142167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-9174203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.96E-6175203No hitNo description
PROSITE profilePS5015710.492179203IPR007087Zinc finger, C2H2
SMARTSM003550.0056179203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181203IPR007087Zinc finger, C2H2
SMARTSM003550.03211236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58211236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-5212234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
SMARTSM0035520239260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.68E-8250311No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5251291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.946269299IPR007087Zinc finger, C2H2
SMARTSM003554.5E-5269294IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4293322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974300326IPR007087Zinc finger, C2H2
SMARTSM003550.7300326IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280302326IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEEMVSMEPA APVGRIANKD AERGSEQKKT IFRDIRRYYC EYCGMCRSKK SLIRSHILSH  60
HKDVLEGIQT DQVNEEKEVS NQPKHTCQEC GASFRKPAHL KQHMQSHSLE RPFSCPLDDC  120
HLSYRRKDHL TRHLLQHQEK LFTCPMENCN RRFAIKSNMK RHVKQIHEDG SPCEGEKQYI  180
CEEAGCRKTF NYASKLRKHE DTHVKLDCVE VVCSESGCMK TFTNAECLKA HIRSCHRYVQ  240
CEICGTQYLK KNIKRHQHMH EGVRMMERIK CSFKGCQYTF SNRSNLNQHI KAVHQELRPF  300
ACQILGCGKR FPYRHVRDNH EKSGVHVYVQ GDFIETDEQR RSRPRGGRKR KHFSVETLQW  360
KRVVPPDQAS SLDDGTYYMR WLLSDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-178929619190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-178929619190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805822.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-132TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2H3YYI50.0A0A2H3YYI5_PHODC; transcription factor IIIA-like
STRINGXP_008805822.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-126transcription factor IIIA