PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 291aa    MW: 31753 Da    PI: 9.7341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920989.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-066284123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F r  nL+ H r+H
  XP_010920989.1 62 YVCGVCKRGFERDQNLQLHKRSH 84
                    9********************99 PP

2zf-C2H211.40.001138160123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cgk++    ++k+H +++
  XP_010920989.1 138 WRCENCGKMYAVEADMKVHFNRC 160
                     58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-56185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.26E-56185No hitNo description
PROSITE profilePS5015710.6996284IPR007087Zinc finger, C2H2
SMARTSM003550.0346284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035578103133IPR015880Zinc finger, C2H2-like
SMARTSM00355120138158IPR015880Zinc finger, C2H2-like
SMARTSM0035590165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSADAPAVPF SAQSLPGETN RNLTPQQQIP QPKRKRNGPG RPDPTAEVVA LSPERLLATG  60
VYVCGVCKRG FERDQNLQLH KRSHNLVVSL KKSGTHKKRK RVYVCPEPSC VYHDPTRALG  120
DITGIKKHYL RKHCSRRWRC ENCGKMYAVE ADMKVHFNRC STGNFRCERC GKESNRKRSC  180
AAHQKDCNVA NPRGVPMMAH EGGNGVSNVV QGVTASNASH PLMAPSFANF NEGMGSNASW  240
TTGGYAVGGE WNAENYAGPG GCVGNGAAWF GGNDSGLPPM DALAYMSWMR F
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120205.11e-177protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8GYC15e-60IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2H3Y9B41e-111A0A2H3Y9B4_PHODC; zinc finger protein MAGPIE
STRINGXP_008795394.11e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5079222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.18e-60indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]