PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919568.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 373aa    MW: 40612 Da    PI: 6.4418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919568.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046226248123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  XP_010919568.1 226 YQCGTCKKVFRSYQALGGHRASH 248
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.34E-7326No hitNo description
PfamPF139128.9E-5426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016426IPR007087Zinc finger, C2H2
SMARTSM003550.18426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-7221248No hitNo description
PfamPF139123.0E-10226250IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18226253IPR007087Zinc finger, C2H2
SMARTSM003550.098226248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
PfamPF139121.1E-9280303IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704281303IPR007087Zinc finger, C2H2
SMARTSM003550.43281303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEKHTCKLCF RRFANGRALG GHMRSHVTLA TPPAKAQLLH DSSASSTSAF SREAAAAALE  60
EVEERGGDVE GKGIGLCYGL RENPRKSFRL VDPEFSSSFP AVEAVSSSIV QDRESETESS  120
RDPPSHRRRS KRPRQAAPPP PPEPPEPEPA SSVSDTTPEE DVALSLMMLS RDFWTKTKTQ  180
AEDEDEEQRS NGWDEEDDAE EEENEGQIVA SRSRPLPPAA RGRSKYQCGT CKKVFRSYQA  240
LGGHRASHKK SRGGCIPAVQ TQIHDAESSK GNADREANKV HECPFCFRVF GSGQALGGHK  300
RSHLVSSAAA TTITISSPAP LPPSPSLPRI IGRCGENFSF IDLNLPAPLE DDTELSAVSD  360
AEFIAKRRNL PSN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919568.10.0LOW QUALITY PROTEIN: zinc finger protein ZAT4
TrEMBLA0A2H3YBR40.0A0A2H3YBR4_PHODC; zinc finger protein ZAT4-like
STRINGXP_008796144.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-34C2H2-like zinc finger protein