PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 365aa    MW: 37674.5 Da    PI: 8.2565
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919196.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.63.3e-3682157788
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 
                     r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++      + +++ +++
  XP_010919196.1  82 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIAT------NVGGTLKIP 157
                     9**********************************************************77777333......111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.49783137IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2983155IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDSQKQEKEE DEDRRRTDLR MAGCGSSGGG GVSGSSGGGG GGGGGMTLPP PVAIPVHRFI  60
IPKPEPIEMR GGFQILRRPT GRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG  120
ETIRWLLQHA EPAIIAATGT GTVPAIATNV GGTLKIPTEA PLTAPVTSTS TPAADAAGEE  180
ATKKRRRKLQ PSRAAGTGVA AAAAAVYYPV QDPLLPGGGA ISMSTGLAPI GAGQGMVPMW  240
AATAGGRVIP PGALWMLPPP SAIAGPSSQP QLWTFPSVPQ IINLATARTI SATTVFPPVA  300
VPPAPSSSAA AAGSSAASAP AARGDKAELQ LMGESGEQRH RQDEKQKENH EEEEEEELSE  360
SSPED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187KKRRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919196.10.0transcription factor PCF2
SwissprotA2YXQ11e-77PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-77PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2H3YTF60.0A0A2H3YTF6_PHODC; transcription factor PCF2-like
STRINGXP_008803243.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-53TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]