PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919168.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 450aa    MW: 49156.2 Da    PI: 9.3174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919168.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-065375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cgk F r  nL+ H r H
  XP_010919168.1 53 FVCEICGKGFQRDQNLQLHRRGH 75
                    89*******************88 PP

2zf-C2H212.90.00032129151123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010919168.1 129 WKCDKCSKRYAVQSDWKAHSKTC 151
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.15E-75275No hitNo description
SMARTSM003550.0125375IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-55375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6145375IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-7124149No hitNo description
SMARTSM00355140129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAGEAISKSF PPNPTQESNP PIIKKKRNQP GNPDPQAEVI ALSPKTLLAT NRFVCEICGK  60
GFQRDQNLQL HRRGHNLPWK LRQRSTKEPR KRVYVCPEKT CIHHHPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTIFSRRDSF ITHRAFCDAL  180
AEETARVSAA SNISSLTSNS NANYQFTSGL MRSNMVQHFP AMFNPAAAEG QVGDHATPGL  240
PLWIHHGEVL STDSSLSSMH QTGPVSIETL HGDPFASCSN GGHQLNRQLS WIYGNDLASS  300
SSGELITSTS SLIPTSLKEA DLVSVPSWFS TRHHQQHSMP ASGMSATALL QKAAQIGVTS  360
SSPSFFGGVE MKRHNTHVQD GSEYNGLLNP SHPGVAANMA GSLESTANPY NNMYSTRHQL  420
AQKDGGGGAT RDFLGVGVQT ICPSSVNGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36125192370Zinc finger protein JACKDAW
5b3h_F2e-36125192370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919168.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-143IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2H3YG310.0A0A2H3YG31_PHODC; zinc finger protein NUTCRACKER-like
STRINGXP_008798233.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]