PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918823.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 184aa    MW: 20490.2 Da    PI: 4.7668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918823.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000293355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  XP_010918823.1 33 YECMFCKRGFTTAQALGGHMNIH 55
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-63160No hitNo description
Gene3DG3DSA:3.30.160.605.9E-43259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-53257IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0743360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEGGHNKDTK TSSGEAGSPE PASDDAGTMR SYYECMFCKR GFTTAQALGG HMNIHRKDRA  60
RMQHGRMASS VSGKAEEDSE GYGYNKPYSN QNRTFYPRVS ESLKNYNLYF PPASSSGGRD  120
TRVAADDDMG SQRQGELSLF GQELQLGLGT HFDDDSRAVC EEEKRKDDDD EEELDLELRL  180
GHQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918823.11e-135transcriptional regulator TAC1
TrEMBLA0A2H3XS981e-104A0A2H3XS98_PHODC; transcriptional regulator TAC1-like
STRINGXP_008787986.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-13C2H2 family protein