PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918698.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 1626aa    MW: 181323 Da    PI: 6.5664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918698.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006215101534123
                      EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                      ++C    C +sF+++ +L  H r++
  XP_010918698.1 1510 FECDveGCQMSFRTRGELSLHKRNC 1534
                      789999*****************95 PP

2zf-C2H212.10.0005915931619123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      ykC+   Cg++F+  s++ rH r+  H
  XP_010918698.1 1593 YKCKvsGCGQTFRFVSDFSRHRRKtgH 1619
                      99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-121555IPR003349JmjN domain
PROSITE profilePS5118313.0371657IPR003349JmjN domain
PfamPF023755.7E-131750IPR003349JmjN domain
SMARTSM005581.1E-48234403IPR003347JmjC domain
SuperFamilySSF511974.12E-27235399No hitNo description
PROSITE profilePS5118434.267237403IPR003347JmjC domain
PfamPF023732.5E-37267386IPR003347JmjC domain
SMARTSM003559.415101532IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.17715331562IPR007087Zinc finger, C2H2
SMARTSM003551715331557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.71E-515331570No hitNo description
PROSITE patternPS00028015351557IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-415351561IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.7E-1015621587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9E-415631587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.00915631592IPR007087Zinc finger, C2H2
PROSITE patternPS00028015651587IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-1015731615No hitNo description
Gene3DG3DSA:3.30.160.607.0E-1115881616IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.08815931619IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.19815931624IPR007087Zinc finger, C2H2
PROSITE patternPS00028015951619IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1626 aa     Download sequence    Send to blast
MAAPEIPAWL KGLPMAPEYR PTETEFADPI AFISRIEGEA AAFGICKVIP PLPKPSKKFV  60
LANLNRSLCT SPDPVPGSCP AATGDAAVFT TRHQELGSRR TRAPVHKQVW QSGEVYTLEQ  120
FEARSKAFAR SQLGGFKEVS PLLVEALFWK AASEKPIYVE YANDVPGSGF AVPEEPFRYY  180
SHRRLRRKRG FNRGRVQEPK FSCLAASREA RQQNVSVAES NEREGTVTGT AGWKLSNSPW  240
NLQAIARSPG SLTRFMPDEV PGVTSPMVYI GMLFSWFAWH VEDHELHSLN FLHMGSPKTW  300
YAVPGEYAAT LEEIVRVQGY GGNVDRLTAF TMLGEKTTLL SPEVLVASGV PCCRLVQHPG  360
EFVVTFPRAY HVGFSHGFNC GEAANFATPQ WLKVAKEAAV RRAAMSYLPM LSHQQLLYML  420
TMSFVSRVPR ELLPGVRSSR LSDRKKEERE ILVKKAFLDD MMNENRLLCD LLAKISIPHV  480
VLWEPELLPF PCTVHQSCSS SISREAHGLL VDDDCGRAQP QLKGKNSFDC KEDDCCVVDA  540
DKAEANVNSI SSQNISSETQ KNTCHPECMS SHGEVMDSAD VDEDDLPFGL HVDSGSLACV  600
ACGILGYPFM AILQPSEKAL KELFSLNCEE SDLKLEKSES SGQPLHLPNP EKKFYSDLEQ  660
NGIKPEEWRK ADLTCNLSLE QSGHASDAPS AIKEPSSYST KVPEVTCESI VQTRADNTLG  720
TCILSNNSAN DMEYLHMFSP MEHLVGEQNL QSENTVCAPG KESVCQHSNE LHSFDKEKEY  780
DGTVHMKTDA IFQNDLCCSN PSSAKPLNKT ERLLGTTVAR CCHENTKWNT SNGFLRSRIF  840
CLQHALEIEE LLRCKGGAHV LIICHSDYLK IKALAISIAE EIGIQFNCKD VPLENASPPE  900
LDLINTSIDD EEHEEDGKDW TSKLGVNLKY CIKLRKQQPS NQEQVANQER LALSLGGIFS  960
NPSLVSPILN LKWLCRKSRS QYKVIGTIQS KSYIDANTEK SEPVTENPNV NPANEIQVYK  1020
SRKNERNDMA SKHRACPRKD APKELDAYND VAMVNRDDHK NTSGHTHQTG RVVDVSTDNL  1080
LTVPILFAEY PRMHRDGWAT KKISTQHIVL DSPKSCNLSV PVDSPIVSCE NPPGIHCSKL  1140
DNIMIVSDPG KVETSHPYFN VPMLECSDLG QGGVEGSMSR CKAGSLDKPR FEVNIVMLEG  1200
EYSEVQREEK VVDETNSEHE IHGTVKPVCV PTSRTFDRSE DQPEMVMANI STLEGSLGMP  1260
SLSEEQLTVP FLSSNSSEMH LNIVALNKSV PKNVGANSAE GNIEMQEEVP AAREGILQDD  1320
VVSGNESQFT VDNSVVESSQ IQQEAHLAND TPANCKAVDY LRSEYHSVTT KPVIDDSRTS  1380
ANAGSVSVVD VLGVQEVTEN TRDVTLSVGN DNFPQNVERH NNTPTRVDLI HYVRRRNKRK  1440
REAEKITESR NSCISFVRSP CEGLRPRTGR PTALMSDMSI MEEKVTPTKA NKRLERLVVL  1500
KGKEKGKEAF ECDVEGCQMS FRTRGELSLH KRNCCTYEGC GKRFRSHKYA MRHQCVHDDE  1560
RPLKCPWKGC NMSFKWAWAR TEHIRVHTGE RPYKCKVSGC GQTFRFVSDF SRHRRKTGHY  1620
VNSPAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-6594178346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-6594178346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114331439RRRNKRK
214341441RRNKRKRE
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918698.10.0lysine-specific demethylase SE14 isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A2H3WXV70.0A0A2H3WXV7_PHODC; lysine-specific demethylase SE14
STRINGXP_008775348.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein