PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 283aa    MW: 28357.7 Da    PI: 10.5886
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918406.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.7e-3944143393
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s + s+s+s+s+        
  XP_010918406.1  44 VKKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLTVSLRHSSSASTSSsapldlkp 138
                     69****************************************************************99888755555544443333322344443 PP

             TCP  89 kaaks 93 
                     ++++s
  XP_010918406.1 139 HSSAS 143
                     22222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3449141IPR005333Transcription factor, TCP
PROSITE profilePS5136928.20949103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGGADGGANG GPLTDHSHQR QPQITASAAG SNGNGAGAGN SMLVKKAPSK DRHSKVDGRG  60
RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTLTVSL  120
RHSSSASTSS SAPLDLKPHS SASAATGGAA QHLLPQPLAP APFILGKRLR PDDDSAAGKD  180
DAGGAGLGAA GGFWAVPARS DFGQVWSFAA PEMVVPQASL SGRFAAAAAL AAQPVGEASA  240
ARVGNYLPMA QGHLNLLASL SGTPAAAAAA AAAAAGRRED EPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918406.10.0transcription factor TCP7
SwissprotQ9FMX23e-79TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2H3XPX21e-146A0A2H3XPX2_PHODC; transcription factor TCP7-like
STRINGXP_008787053.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-52TCP family protein