PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918201.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 324aa    MW: 36524.3 Da    PI: 4.8487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918201.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11159201754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+k+L
  XP_010918201.1 159 MAERRRRKRLNDRLSLLRSVVPKI-----TKMDRTSILGDTIDYVKEL 201
                     79*********************7.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9159201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-5159206No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGMDEQSLLQ ELFAPWRQTS EPNCFQGGVD CFQGTACPVS PNYAAFEELV LQEEPNFDCL  60
NEVYRPFGSG FHSTAPELQS PCTMMTHSTI SCSTQENEEI GVIHEGNHST WYQGQSIWKV  120
EPMQTMDNHL VFGGTGSSCL ERKNSRLKKV DGLPSKNLMA ERRRRKRLND RLSLLRSVVP  180
KITKMDRTSI LGDTIDYVKE LLERIKSLQD EIKVGQDQLN LLDTFNGVNP NEMLPRISPK  240
FNVERRERDT RIEISCAAKP GSLLSTVYTL EALGLEIQQC VASCFSDFGM QASCSEDKEQ  300
RAFISSEEME QALFSTAVYG GKYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918201.20.0transcription factor bHLH93-like
SwissprotQ9LSL18e-67BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2H3Y1C60.0A0A2H3Y1C6_PHODC; transcription factor bHLH93-like
STRINGXP_008791955.11e-119(Phoenix dactylifera)
STRINGXP_008806159.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-61beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]