PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917616.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 391aa    MW: 42965.4 Da    PI: 8.6859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917616.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-0585107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_010917616.1  85 FVCEICNKGFQRDQNLQLHRRGH 107
                     89*******************88 PP

2zf-C2H213.30.00025162184123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_010917616.1 162 WKCEKCSKRYAVHSDWKAHVKTC 184
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.72E-784107No hitNo description
PfamPF121715.9E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355120127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.72E-7157182No hitNo description
SMARTSM0035584162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MFPSGTMSNS TSMSEEASVS SDTRAHDYNN SMGSLCTPIS PPYHQQQQQE PQPKAKKKRS  60
QPGNPDPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSSKE  120
GVRKRVYVCP ESSCIHHHPS RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVHSDWKAH  180
VKTCGTREYR CDCGTLFSRK DSFITHRAFC DALAEESARL MAATTDAAAA TAMTTSISHP  240
LLHHPLFLPF SSCDYLPNPN PNPNCNTSPY QVKPHNPLPS LLHHLPTTIS PYLSATMHPL  300
PTTRSATIST AAGGQMGSSM FDAGDPSAWQ RSDRLTRDFL GAAAGDTGEE GLLSLTGALG  360
LDLVTAASCD RGDHAKHFVG FPPVTGTWGD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35158220365Zinc finger protein JACKDAW
5b3h_F1e-35158220365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917616.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-113IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2H3ZHA50.0A0A2H3ZHA5_PHODC; protein indeterminate-domain 12-like
STRINGXP_008813524.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]