PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917441.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 196aa    MW: 21460.9 Da    PI: 6.2788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917441.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-171261255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr +k +grWv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  XP_010917441.1 12 RYRGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAVVCLRG 61
                    7*****999.**********933...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-261271No hitNo description
SMARTSM003805.5E-311275IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-201270IPR016177DNA-binding domain
PfamPF008473.2E-101261IPR001471AP2/ERF domain
PROSITE profilePS5103222.6161269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-291270IPR001471AP2/ERF domain
PRINTSPR003672.8E-91324IPR001471AP2/ERF domain
PRINTSPR003672.8E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVKTEHAGDE RRYRGVRKRK WGRWVSEIRL PNSRERIWLG SYDSPEKAAR AFDAAVVCLR  60
GRRGRLNFPD APPRISGGGS LNARQIQAAA ARHAHNDDFA GAVAAPEMSQ SEAVTAESGE  120
VLDWSFMDLL TVPDGVGMNF LDEFAYDFFP PAPASAPPDV AEENGGSYGK LTASFFSRWI  180
LWSPAGSFES GGGWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1312691472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917441.11e-141ethylene-responsive transcription factor ERF017 isoform X1
SwissprotQ84QC21e-41ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2H3Y3Z28e-77A0A2H3Y3Z2_PHODC; ethylene-responsive transcription factor ERF017-like
STRINGXP_008792845.11e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]