PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916819.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 357aa    MW: 39908.8 Da    PI: 8.3021
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916819.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.17.2e-43922462134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..seceaesss 79 
                     a++kdrh ki T+ g+RdRR+Rls+e+a++fFdLqd+LGfd++skt++WLl+ +k+ai +lt                     +  sece++s +
  XP_010916819.1  92 AVRKDRHNKILTAMGPRDRRMRLSLEVARKFFDLQDMLGFDRASKTVQWLLTTSKAAIEKLTVAsrpgdraftneshrnIE--SstSECEDVSTV 184
                     78**************************************************************88888888766655322..133567777777 PP

             TCP  80 ssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                     s ++ +s +       +a++ +ak+ k++++aa + n+a+e r +arararertrek+ +++
  XP_010916819.1 185 SDHKGKSLHvvatsgtEAKRPSAKRAKQPRKAAFHPNIARENRTRARARARERTREKKWMSS 246
                     7777555559999997777777799999999999***********************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-4293244IPR005333Transcription factor, TCP
PROSITE profilePS5136932.75494152IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.796224241IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLPFPDPQNF MERSISQVEL NPPPPKPEHS NFFFPFSPSN VNSDDLHDML STHPILPFAA  60
SMASIPQPPP STLPSNVNSI ATTTPPMRSS TAVRKDRHNK ILTAMGPRDR RMRLSLEVAR  120
KFFDLQDMLG FDRASKTVQW LLTTSKAAIE KLTVASRPGD RAFTNESHRN IESSTSECED  180
VSTVSDHKGK SLHVVATSGT EAKRPSAKRA KQPRKAAFHP NIARENRTRA RARARERTRE  240
KKWMSSAMSK DGGNQWASSS LPLVTIEEES DGHDLKSSLD LVAEVEERCS SMPNQHDKHS  300
KERAPEVPLE GGSLPISILD YGHNFMSIND TISIFQEQWD MEGTPRPWEA FNNSSIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228240RARARARERTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916819.10.0transcription factor TEOSINTE BRANCHED 1-like
TrEMBLA0A2H3XDX11e-108A0A2H3XDX1_PHODC; transcription factor TEOSINTE BRANCHED 1-like
STRINGXP_008782352.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-26TCP domain protein 12