PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010915216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 285aa    MW: 31964.1 Da    PI: 10.1817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010915216.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.61.9e-19161194134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_010915216.1 161 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 194
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-21155206IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-13155199No hitNo description
PROSITE profilePS5011412.466159191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-15159195IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.55E-15160207No hitNo description
PfamPF003203.7E-17161194IPR000679Zinc finger, GATA-type
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSPFYMNKFS AIPLAEGDQD PSHLTPFTLA SAASSRSRPI LLSTSQERGA NNRDHDLLQQ  60
EPEEHLFISK SSDPPVTFPT NYNNTIEESS HDRHVSQEDL HGPSNWMSSK MRFMRKMMNS  120
DHVGKPRRNM QILEDRVPSN QDRSISNNTN GNSPGGIIRV CSDCNTTKTP LWRSGPRGPK  180
SLCNACGIRQ RKARRAMDTA AASGGIILRE AHSKMRKEKK SDVDRTIPFK KRFKIATTTT  240
TQRNPRFDDV LISLGDSSAV HRVFPQDERD AALLLMALSW GIICS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915216.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2H3X9Q81e-147A0A2H3X9Q8_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
STRINGXP_008793253.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-29cytokinin-responsive gata factor 1