PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913438.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 276aa    MW: 32614.8 Da    PI: 10.1173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913438.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17241071298
                     HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++rl +p +f++ +  +k e+  t +l+++ g+sW vk+   ++ + +++++GW++F+ a++L +g  +vFk++g++ef  +v++f+
  XP_010913438.1  24 FLDRLHIPHDFIRYFiRKKVEKADTAVLRSPLGKSWHVKV--HGNFKDMYFGEGWQDFAVAHDLSVGFLLVFKYKGNMEF--KVTIFD 107
                     4689********665955556778****************..9999999***************************9999..999987 PP

2B348.41.7e-15178276399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                     k+ +++++lk+   + +p  f ++++++++  ++++l+d++ + W v+l +r++  +  + +++GW+eF   n+LkegD+++F+ + ++++  ++
  XP_010913438.1 178 KAIIKHYNLKLkPYMNVPTIFQASYSLSSK--RQVILRDPQWQLWPVRLYHRRRNTMvqTHFGSGWREFHMYNNLKEGDTCIFEIIpEDQNDIMH 270
                     6667777777744688999**99**88854..47***************65555555668899*********************9955588889* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v++frk
  XP_010913438.1 271 VHIFRK 276
                     ***996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-2212111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.08413109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.7E-2214116IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-1916109IPR003340B3 DNA binding domain
CDDcd100179.15E-2116107No hitNo description
PfamPF023627.9E-1525107IPR003340B3 DNA binding domain
SuperFamilySSF1019369.29E-19175275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-14175275No hitNo description
Gene3DG3DSA:2.40.330.106.0E-20175275IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.83177276IPR003340B3 DNA binding domain
SMARTSM010196.1E-4177276IPR003340B3 DNA binding domain
PfamPF023621.1E-12179276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPNKKPKQEG QNGTQFFKIL LPGFLDRLHI PHDFIRYFIR KKVEKADTAV LRSPLGKSWH  60
VKVHGNFKDM YFGEGWQDFA VAHDLSVGFL LVFKYKGNME FKVTIFDLSA CEKEYNPFHA  120
NCSSDIDRRP ISGSSEQLVA EHKKFIAYLN RQVAIRDFKP VKKVYETRSC CSLGPHFKAI  180
IKHYNLKLKP YMNVPTIFQA SYSLSSKRQV ILRDPQWQLW PVRLYHRRRN TMVQTHFGSG  240
WREFHMYNNL KEGDTCIFEI IPEDQNDIMH VHIFRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913438.10.0B3 domain-containing protein Os03g0212300 isoform X3
TrEMBLA0A2H3ZUD91e-177A0A2H3ZUD9_PHODC; B3 domain-containing protein Os03g0212300-like
STRINGXP_008798035.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-26B3 family protein