PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 305aa    MW: 32466.2 Da    PI: 10.3959
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912999.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.7e-3980172289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....k 89 
                     a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+pai+++tg+++++as+  ++ssss++s+++++      
  XP_010912999.1  80 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPAIIAATGSGTIPASALASSSSSSAVSTPHQTnwtglG 172
                     7899*****************************************************************888555555555544433445553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3285160IPR005333Transcription factor, TCP
PROSITE profilePS5136927.73786140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPKGYSTVP PEAPKFHREL GRHPEDKREP PTRIGSTTTQ QHQESSSRGG GGDLQIMMMA  60
STVPPTSVTE KEDQQRRQLA PRRSSNKDRH TKVDGRGRRI RMPALCAARI FQLTRELGHK  120
SDGETIQWLL HQAEPAIIAA TGSGTIPASA LASSSSSSAV STPHQTNWTG LGTSTSATGL  180
GRPHHQGLWR TAAASGGFNS GFLQPATSPA PSNIGFQGLE LPGGFSGGMG AMSFLSMLGG  240
PGQQMPGLEL GLSQDASMGG VLNPQVFSQF YQQMRQGRGG EGGQLHHHHQ QPLASLKDNS  300
HESTK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912998.10.0transcription factor TCP20
RefseqXP_010912999.10.0transcription factor TCP20
RefseqXP_029118484.10.0transcription factor TCP20
SwissprotQ9LSD58e-60TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A2H3YIF01e-143A0A2H3YIF0_PHODC; transcription factor TCP20-like
STRINGXP_008798978.11e-144(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-50TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]