PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912518.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 371aa    MW: 42252.2 Da    PI: 7.1362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912518.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001379101323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F +   L++H   H
  XP_010912518.1  79 CSyeGCGKTFIDVGALRKHAHIH 101
                     77779**************8877 PP

2zf-C2H216.81.9e-05106130123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F ++s LkrH  tH
  XP_010912518.1 106 YVCHfeGCGKKFLDSSKLKRHFLTH 130
                     9********************9998 PP

3zf-C2H220.71.1e-06136160123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk Fs   nLk H++tH
  XP_010912518.1 136 FICPheGCGKAFSLDFNLKAHMKTH 160
                     78**********************9 PP

4zf-C2H211.10.0013166190123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk +++   Lk+Hi+ H
  XP_010912518.1 166 HICPypECGKKYTHECKLKSHIKAH 190
                     679999*****************96 PP

5zf-C2H216.13.2e-05229254123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   Cgk + + + L+ H+r+ H
  XP_010912518.1 229 YACPyeGCGKAYIHEYKLNLHLRReH 254
                     89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55477106IPR007087Zinc finger, C2H2
SMARTSM003550.004277101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-880130No hitNo description
Gene3DG3DSA:3.30.160.601.5E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.879106135IPR007087Zinc finger, C2H2
SMARTSM003550.0032106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-13117169No hitNo description
Gene3DG3DSA:3.30.160.605.6E-19127163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.196136165IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4136160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6164190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45166195IPR007087Zinc finger, C2H2
SMARTSM003550.13166190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-9224252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.26E-6224252No hitNo description
PROSITE profilePS5015710.99229259IPR007087Zinc finger, C2H2
SMARTSM003550.0029229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLQTNHSMF ERRPPDKDRT PAVRWFREWV PQEVAATGGK CYLLKWVTED MLKTLREKSK  60
EPQAEEPKAE PTTEVLFLCS YEGCGKTFID VGALRKHAHI HGERQYVCHF EGCGKKFLDS  120
SKLKRHFLTH TGERDFICPH EGCGKAFSLD FNLKAHMKTH SLENYHICPY PECGKKYTHE  180
CKLKSHIKAH HEKNSVIDGM KHAPPAEKLH STPKTATAAY GSASSERPYA CPYEGCGKAY  240
IHEYKLNLHL RREHPGHNAE ENGKHAPAAD HVMDEASDHD AYIVKGGSVG KNNKRSSKTN  300
LVQKMPPAKM VNRKGSNLAS VNVSSVKKRW SSKEVYEEDS EETEEDRDNV EEDGWRYRGT  360
NGDDEETEDE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-33701902118PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912518.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-132YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2H3Z3470.0A0A2H3Z347_PHODC; zinc finger transcription factor YY1-like isoform X1
STRINGXP_008807673.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]