PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912147.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 595aa    MW: 65781.2 Da    PI: 8.0557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912147.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13448494455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_010912147.1 448 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 494
                     799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-5058244IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19447512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-14447498No hitNo description
Gene3DG3DSA:4.10.280.102.7E-19448514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10448494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.476530595IPR002912ACT domain
CDDcd048730.00701543587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKTEMGTGVG VGVGLSVWSD EDRAMAVAVL GHQAVDYLFS SHVSSDGLLT AIGGDADLQN  60
KFQDLVDRPG SPWASAIFWQ ISRSKSGDLV LGWGDGHCRE LRDGEEDLRR SAAALDDGRQ  120
KMRKRVLQKL HVLSGGADDE NYALRLDRVT DVEMFFLASM YFSFPRGTGG PGKALASREH  180
VWVSDPSLRL PTLAADYCVR AFLARSAGFR TVVLVPFDTG VLELGSVKTV PESFEALQMI  240
RAVFSAGEKK DENGLVFRRV SASEEFPRIF GKDLNIGRRS QFNDRLSVAT KVEERPFEIQ  300
PNGGNHHRMV PVPVSSGPVN GLNWTQQQKF ANGMVVIGGG EVDPSSRAFV HHSNGVRDDP  360
RMNLFSTPKQ QQQQQQQQPP PPQPRQIDFS GGATSRASGA LAARLGAMES EHSDAEASCK  420
EERPGAMDER RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA  480
SLLGDAIAYI TELQKKLKEM EAERERWPES TSRLGQAPEI DVQAVHDEVI VRVSCPMDTH  540
PVSKVIQVFK ESQINVVDSK VSASNETVLH TFVVKSPGSE QLTRDKLVAA ISRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23582459193Transcription factor MYC3
4rqw_B3e-23582459193Transcription factor MYC3
4rru_A3e-235824048227Transcription factor MYC3
4rs9_A3e-23582459193Transcription factor MYC3
4ywc_A3e-235824048227Transcription factor MYC3
4ywc_B3e-235824048227Transcription factor MYC3
4yz6_A3e-23582459193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429437RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912147.10.0PREDICTED: transcription factor bHLH13
TrEMBLA6NAB40.0A6NAB4_VITVI; Myc2 bHLH protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-150bHLH family protein