PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912101.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Dof
Protein Properties Length: 216aa    MW: 22701.1 Da    PI: 8.3666
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912101.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.83.3e-401878262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +e++lkcprC+stntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGgg+rkn k+s
  XP_010912101.1 18 PEQHLKCPRCESTNTKFCYYNNYNLSQPRHFCKDCRRYWTKGGALRNIPVGGGTRKNSKRS 78
                    7899*****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-251273IPR003851Zinc finger, Dof-type
PfamPF027011.6E-332076IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2642276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MQGSPAVQGV AKPPFPEPEQ HLKCPRCEST NTKFCYYNNY NLSQPRHFCK DCRRYWTKGG  60
ALRNIPVGGG TRKNSKRSAA SATAGATASK RPSTSSPPPP PSSNHLPKPE PVSVLYPSAT  120
DPDDRLLDIS GSFSSLLASS GGFGNLLEGF GSAAGAVPNS GDLNRSMGGG MDQLHNSGDG  180
NGNENPAALE NFLGDSSCWG NGWPDLRIYT PGSGFP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912101.11e-157dof zinc finger protein DOF3.1
SwissprotO821552e-39DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2H3YF451e-124A0A2H3YF45_PHODC; dof zinc finger protein DOF3.1-like
STRINGXP_008797869.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-35DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]